Systematics Collections Data

ICMP 6884 – Stagonosporopsis loticola (Died.) Aveskamp, Gruyter & Verkley

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 6884
Type status:
ex Type
Culture type:
Fungal Culture
Database record added:
25 January 2002
Database record updated:
24 February 2023
Components
Primary component
Active identification
Determined name:
Phoma lotivora P.R. Johnst.
Determiner:
Identification date:
Preferred name:
Stagonosporopsis loticola (Died.) Aveskamp, Gruyter & Verkley
Division:
Ascomycota
Class:
Dothideomycetes
Order:
Pleosporales
Family:
Didymellaceae
Identification type:
Determination
Note:
identification confirmed using DNA sequences [PRJ, Jan 2016]
Associations:
isolated from Lotus pedunculatus Cav.
Other identifications
Identification
Determined name:
Phoma lotivora
Determiner:
Identification date:
Preferred name:
Stagonosporopsis loticola (Died.) Aveskamp, Gruyter & Verkley
Active:
no
Identification type:
Received as
Other components
Active identification
Determined name:
Lotus pedunculatus Cav.
Determiner:
Identification date:
Preferred name:
Lotus pedunculatus Cav.
Division:
Tracheophyta
Class:
Magnoliopsida
Order:
Fabales
Family:
Leguminosae
Vernacular name:
lotus
Identification type:
Determination
Part affected:
stem base and leaf spot
Present:
no
Collection events
Primary collection event
Collection event type:
Field
Standard locality
Location:
Mount Albert
Georeferences:
Latitude and Longitude (WGS84):  -36.884  174.716 
Verbatim locality:
Mt Albert
Verbatim collector:
P.R. Johnston
Standardised collector:
Peter R. Johnston
Verbatim date:
1980/05/00
Start date:
1980-05
Country:
New Zealand
New Zealand Area Codes:
Auckland
Native lands:
Ngāi Tai ki Tāmaki
Ngāti Maru (Hauraki)
Ngāti Paoa
Ngāti Tamaoho
Ngāti Tamaterā
Ngāti Whātua
Ngāti Whātua o Ōrākei
Te Ākitai Waiohua
Te Kawerau a Maki
Georeferences:
New Zealand Map Grid:  2663970E 6477870N  (WGS84 -36.887998 174.723076)
Culture flags
Price Category:
Category 1
External links
CIS - PDD:

PDD 40427

GenBank:

GU237697 - tub2

GU238192 - 28S ribosomal RNA

KT309348 - act

GU237890 - 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

KT310014 - 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

KT389684 - RPB2

MH861379 - genomic DNA

MH873130 - large subunit ribosomal RNA

Literature:

Chen, Q.; Jiang, J.R.; Zhang, G.Z.; Cai, L.; Crous, P.W. (2015)Resolving the Phoma enigma.Studies in Mycology82(1)137-217. DOI: 10.1016/j.simyco.2015.10.003

Vaghefi, Niloofar; Hay, Frank S.; Pethybridge, Sarah J.; Ford, Rebecca; Taylor, Paul W. J. (2016)Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae.European Journal of Plant Pathology146(3)581-595. DOI: 10.1007/s10658-016-0944-4

Johnston, P. R.; Park, D.; Ho, W. W. H.; Alexander, B. J. R. (2017)Genetic validation of historical plant pathology records - a case study based on the fungal genus Phoma from the ICMP culture collection.Plant Pathology66(9)1424-1431. DOI: 10.1111/ppa.12728

Hou, L.W.; Groenewald, J.Z.; Pfenning, L.H.; Yarden, O.; Crous, P.W.; Cai, L. (2020)The phoma-like dilemma.Studies in Mycology96309-396. DOI: 10.1016/j.simyco.2020.05.001

Culture events
Isolated:
Date:
01 May 1980 (Verbatim: 01 May 1980)
Deposited:
Note:
Derived from earliest batch date
Actioned by:
Peter R. Johnston (Reference number lV)
Date:
01 May 1980 (Verbatim: 01 May 1980)
Duplicates
American Type Culture Collection: ATCC 60458
Direction:
Duplicate
Westerdijk Fungal Biodiversity Institute: CBS 562.81
Direction:
Sent
Assigned reference numbers
PDDCC:
PDDCC 6884
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice